7KDT

Human Tom70 in complex with SARS CoV2 Orf9b


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.

Gordon, D.E.Hiatt, J.Bouhaddou, M.Rezelj, V.V.Ulferts, S.Braberg, H.Jureka, A.S.Obernier, K.Guo, J.Z.Batra, J.Kaake, R.M.Weckstein, A.R.Owens, T.W.Gupta, M.Pourmal, S.Titus, E.W.Cakir, M.Soucheray, M.McGregor, M.Cakir, Z.Jang, G.O'Meara, M.J.Tummino, T.A.Zhang, Z.Foussard, H.Rojc, A.Zhou, Y.Kuchenov, D.Huttenhain, R.Xu, J.Eckhardt, M.Swaney, D.L.Fabius, J.M.Ummadi, M.Tutuncuoglu, B.Rathore, U.Modak, M.Haas, P.Haas, K.M.Naing, Z.Z.C.Pulido, E.H.Shi, Y.Barrio-Hernandez, I.Memon, D.Petsalaki, E.Dunham, A.Marrero, M.C.Burke, D.Koh, C.Vallet, T.Silvas, J.A.Azumaya, C.M.Billesbolle, C.Brilot, A.F.Campbell, M.G.Diallo, A.Dickinson, M.S.Diwanji, D.Herrera, N.Hoppe, N.Kratochvil, H.T.Liu, Y.Merz, G.E.Moritz, M.Nguyen, H.C.Nowotny, C.Puchades, C.Rizo, A.N.Schulze-Gahmen, U.Smith, A.M.Sun, M.Young, I.D.Zhao, J.Asarnow, D.Biel, J.Bowen, A.Braxton, J.R.Chen, J.Chio, C.M.Chio, U.S.Deshpande, I.Doan, L.Faust, B.Flores, S.Jin, M.Kim, K.Lam, V.L.Li, F.Li, J.Li, Y.L.Li, Y.Liu, X.Lo, M.Lopez, K.E.Melo, A.A.Moss 3rd, F.R.Nguyen, P.Paulino, J.Pawar, K.I.Peters, J.K.Pospiech Jr., T.H.Safari, M.Sangwan, S.Schaefer, K.Thomas, P.V.Thwin, A.C.Trenker, R.Tse, E.Tsui, T.K.M.Wang, F.Whitis, N.Yu, Z.Zhang, K.Zhang, Y.Zhou, F.Saltzberg, D.Hodder, A.J.Shun-Shion, A.S.Williams, D.M.White, K.M.Rosales, R.Kehrer, T.Miorin, L.Moreno, E.Patel, A.H.Rihn, S.Khalid, M.M.Vallejo-Gracia, A.Fozouni, P.Simoneau, C.R.Roth, T.L.Wu, D.Karim, M.A.Ghoussaini, M.Dunham, I.Berardi, F.Weigang, S.Chazal, M.Park, J.Logue, J.McGrath, M.Weston, S.Haupt, R.Hastie, C.J.Elliott, M.Brown, F.Burness, K.A.Reid, E.Dorward, M.Johnson, C.Wilkinson, S.G.Geyer, A.Giesel, D.M.Baillie, C.Raggett, S.Leech, H.Toth, R.Goodman, N.Keough, K.C.Lind, A.L.Klesh, R.J.Hemphill, K.R.Carlson-Stevermer, J.Oki, J.Holden, K.Maures, T.Pollard, K.S.Sali, A.Agard, D.A.Cheng, Y.Fraser, J.S.Frost, A.Jura, N.Kortemme, T.Manglik, A.Southworth, D.R.Stroud, R.M.Alessi, D.R.Davies, P.Frieman, M.B.Ideker, T.Abate, C.Jouvenet, N.Kochs, G.Shoichet, B.Ott, M.Palmarini, M.Shokat, K.M.Garcia-Sastre, A.Rassen, J.A.Grosse, R.Rosenberg, O.S.Verba, K.A.Basler, C.F.Vignuzzi, M.Peden, A.A.Beltrao, P.Krogan, N.J.

(2020) Science 

  • DOI: 10.1126/science.abe9403
  • Primary Citation of Related Structures:  
    7KDT

  • PubMed Abstract: 
  • The COVID-19 (Coronavirus disease-2019) pandemic, caused by the SARS-CoV-2 coronavirus, is a significant threat to public health and the global economy. SARS-CoV-2 is closely related to the more lethal but less transmissible coronaviruses SARS-CoV-1 ...

    The COVID-19 (Coronavirus disease-2019) pandemic, caused by the SARS-CoV-2 coronavirus, is a significant threat to public health and the global economy. SARS-CoV-2 is closely related to the more lethal but less transmissible coronaviruses SARS-CoV-1 and MERS-CoV. Here, we have carried out comparative viral-human protein-protein interaction and viral protein localization analysis for all three viruses. Subsequent functional genetic screening identified host factors that functionally impinge on coronavirus proliferation, including Tom70, a mitochondrial chaperone protein that interacts with both SARS-CoV-1 and SARS-CoV-2 Orf9b, an interaction we structurally characterized using cryo-EM. Combining genetically-validated host factors with both COVID-19 patient genetic data and medical billing records identified important molecular mechanisms and potential drug treatments that merit further molecular and clinical study.


    Organizational Affiliation

    J. David Gladstone Institutes, San Francisco, CA 94158, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM70A500Homo sapiensMutation(s): 0 
Gene Names: TOMM70KIAA0719TOM70TOMM70A
Find proteins for O94826 (Homo sapiens)
Explore O94826 
Go to UniProtKB:  O94826
NIH Common Fund Data Resources
PHAROS  O94826
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
ORF9b proteinB97Severe acute respiratory syndrome coronavirus 2Mutation(s): 0 
Gene Names: 9b
Find proteins for P0DTD2 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTD2 
Go to UniProtKB:  P0DTD2
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
DARPAUnited StatesHR0011-19-2-0020
FastGrantsUnited StatesCOVID19 grant
Laboratory for Genomics ResearchUnited StatesExcellence in Research Award COVID19
Quantitative Biosciences InstituteUnited States--

Revision History 

  • Version 1.0: 2020-10-21
    Type: Initial release
  • Version 1.1: 2020-11-04
    Changes: Database references