7JSR

Crystal structure of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 6.27 Å
  • R-Value Free: 0.325 
  • R-Value Work: 0.277 
  • R-Value Observed: 0.279 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

3D architecture and structural flexibility revealed in the subfamily of large glutamate dehydrogenases by a mycobacterial enzyme

Lazaro, M.Melero, R.Huet, C.Lopez-Alonso, J.P.Delgado, S.Dodu, A.Bruch, E.M.Abriata, L.A.Alzari, P.M.Valle, M.Lisa, M.-N.

(2021) Commun Biol 4


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NAD-specific glutamate dehydrogenaseA, B1611Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: gdhMSMEG_4699MSMEI_4582
EC: 1.4.1.2
Find proteins for A0R1C2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R1C2 
Go to UniProtKB:  A0R1C2
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 6.27 Å
  • R-Value Free: 0.325 
  • R-Value Work: 0.277 
  • R-Value Observed: 0.279 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.562α = 90
b = 253.537β = 90
c = 399.721γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
Aimlessdata reduction
XDSdata processing
Aimlessdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agencia Nacional de Promocion Cientifica y Tecnologica (FONCYT)ArgentinaPICT-2017-1932

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-09
    Type: Initial release