7JOT | pdb_00007jot

Adeno-associated virus strain AAV7 capsid icosahedral structure

• PDB DOI: https://doi.org/10.2210/pdb7JOT/pdb
• EM Map EMD-22412: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): adeno-associated virus 7
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2020-08-07 Released: 2020-10-07 
• Deposition Author(s): Firlar, E., Yost, S.A., Mercer, A.C., Kaelber, J.T.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Adeno-associated virus strain AAV7 capsid icosahedral structure

Firlar, E., Yost, S., Mercer, A.C., Kaelber, J.T.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content 

• Total Structure Weight: 58.44 kDa 
• Atom Count: 4,131 
• Modeled Residue Count: 518 
• Deposited Residue Count: 518 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A	518	adeno-associated virus 7	Mutation(s): 0
UniProt
Find proteins for Q8JQG0 (adeno-associated virus 7) Explore Q8JQG0  Go to UniProtKB:  Q8JQG0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	dev-3366
RECONSTRUCTION	RELION	3.1-beta

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-10-07 
Deposition Author(s): Firlar, E., Yost, S.A., Mercer, A.C., Kaelber, J.T.

Revision History  

• Version 1.0: 2020-10-07
  Type: Initial release
  
• Version 1.1: 2024-03-06
  Changes: Data collection, Database references, Derived calculations, Refinement description