7JJ1 | pdb_00007jj1

Crystal structure of the sterol 14alpha-demethylase-ferredoxin (CYP51-fx) heme domain and architectural comparison to the whole fusion protein

PDB DOI: https://doi.org/10.2210/pdb7JJ1/pdb

Classification: OXIDOREDUCTASE
Organism(s): Methylococcus capsulatus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-07-24 Released: 2021-07-28
Deposition Author(s): Zhao, B., Lamb, D.C.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.237 (Depositor), 0.242 (DCC)
R-Value Work:
0.196 (Depositor), 0.198 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the sterol 14alpha-demethylase-ferredoxin (CYP51-fx) heme domain and architectural comparison to the whole fusion protein

Zhao, B., Lamb, D.C.

To be published.

Macromolecule Content

Total Structure Weight: 158.57 kDa
Atom Count: 10,661
Modeled Residue Count: 1,316
Deposited Residue Count: 1,350
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome P450 51	A, B, C	450	Methylococcus capsulatus	Mutation(s): 0 Gene Names: cyp51 EC: 1.14.13.70
UniProt
Find proteins for Q603T8 (Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)) Explore Q603T8 Go to UniProtKB: Q603T8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q603T8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM (Subject of Investigation/LOI) Query on HEM Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain L [auth C] SDF format, chain I [auth B] MOL2 format, chain D [auth A] MOL2 format, chain L [auth C] MOL2 format, chain I [auth B] mmCIF format, chain D [auth A] mmCIF format, chain L [auth C] mmCIF format, chain I [auth B]	D [auth A], I [auth B], L [auth C]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain D [auth A] Focus chain I [auth B] Focus chain L [auth C] Interactions & Density Focus chain D [auth A] Focus chain I [auth B] Focus chain L [auth C]
16A Query on 16A Download:Ideal Coordinates CCD File SDF format, chain M [auth C] SDF format, chain J [auth B] SDF format, chain E [auth A] MOL2 format, chain M [auth C] MOL2 format, chain J [auth B] MOL2 format, chain E [auth A] mmCIF format, chain M [auth C] mmCIF format, chain J [auth B] mmCIF format, chain E [auth A]	E [auth A], J [auth B], M [auth C]	CETYL-TRIMETHYL-AMMONIUM C₁₉ H₄₂ N RLGQACBPNDBWTB-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain J [auth B] Focus chain M [auth C] Interactions & Density Focus chain E [auth A] Focus chain J [auth B] Focus chain M [auth C]
IMD Query on IMD Download:Ideal Coordinates CCD File SDF format, chain O [auth C] SDF format, chain N [auth C] SDF format, chain K [auth B] SDF format, chain H [auth A] SDF format, chain G [auth A] SDF format, chain F [auth A] MOL2 format, chain O [auth C] MOL2 format, chain N [auth C] MOL2 format, chain K [auth B] MOL2 format, chain H [auth A] MOL2 format, chain G [auth A] MOL2 format, chain F [auth A] mmCIF format, chain O [auth C] mmCIF format, chain N [auth C] mmCIF format, chain K [auth B] mmCIF format, chain H [auth A] mmCIF format, chain G [auth A] mmCIF format, chain F [auth A]	F [auth A] G [auth A] H [auth A] K [auth B] N [auth C] F [auth A], G [auth A], H [auth A], K [auth B], N [auth C], O [auth C]	IMIDAZOLE C₃ H₅ N₂ RAXXELZNTBOGNW-UHFFFAOYSA-O		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth B] Focus chain N [auth C] Focus chain O [auth C] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth B] Focus chain N [auth C] Focus chain O [auth C]