7JIZ | pdb_00007jiz

Dienelactone hydrolase family protein ScDLH from Solimonas sp. K1W22B-7

• PDB DOI: https://doi.org/10.2210/pdb7JIZ/pdb

• Classification: HYDROLASE
• Organism(s): Solimonas sp. K1W22B-7
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2020-07-24 Released: 2022-01-26 
• Deposition Author(s): Schnettler Fernandez, J.D.F., Campbell, E.C., Hollfelder, F.H.
• Funding Organization(s): European Commission

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 
  0.211 (Depositor), 0.212 (DCC) 
• R-Value Work: 
  0.166 (Depositor), 0.167 (DCC) 
• R-Value Observed: 
  0.168 (Depositor) 

Starting Model: experimental

Literature

ScDLH

Schnettler Fernandez, J.D.F., Campbell, E.C., Hollfelder, F.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 54.11 kDa 
• Atom Count: 4,205 
• Modeled Residue Count: 478 
• Deposited Residue Count: 504 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dienelactone hydrolase family protein	A, B	252	Solimonas sp. K1W22B-7	Mutation(s): 0  Gene Names: D0B54_07315

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free:  0.211 (Depositor), 0.212 (DCC) 
• R-Value Work:  0.166 (Depositor), 0.167 (DCC) 
• R-Value Observed: 0.168 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.55	α = 90
b = 123.604	β = 100.98
c = 46.655	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-01-26 
Deposition Author(s): Schnettler Fernandez, J.D.F., Campbell, E.C., Hollfelder, F.H.

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Funding Organization	Location	Grant Number
European Commission	European Union	695669

Revision History  

• Version 1.0: 2022-01-26
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description
• Version 1.2: 2025-03-12
  Changes: Structure summary
• Version 2.0: 2025-08-20
  Type: Coordinate replacement
  Reason: Sequence discrepancy
  Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Other, Polymer sequence, Refinement description, Structure summary