Download MendeleyCrystal structure reveals the full Ras:Raf interface and advances mechanistic understanding of Raf activation
Cookis, T., Mattos, C.(2020) Biorxiv
7JHP
Crystal structure of HRas in complex with the Ras-binding and cysteine-rich domains of CRaf-kinase
- DOI: 10.2210/pdb7JHP/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2020-07-21 Released: 2020-08-05
- Funding Organization(s): National Science Foundation (NSF, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.77 Å
- R-Value Free: 0.264
- R-Value Work: 0.211
- R-Value Observed: 0.216
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GTPase HRas | A | 166 | Homo sapiens | Mutation(s): 1 Gene Names: HRAS, HRAS1 EC: 3.6.5.2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01112 (Homo sapiens) Explore P01112 Go to UniProtKB: P01112 | |||||
PHAROS: P01112 GTEx: ENSG00000174775 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RAF proto-oncogene serine/threonine-protein kinase | B [auth C] | 133 | Homo sapiens | Mutation(s): 0 Gene Names: RAF1, RAF EC: 2.7.11.1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04049 (Homo sapiens) Explore P04049 Go to UniProtKB: P04049 | |||||
PHAROS: P04049 GTEx: ENSG00000132155 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GNP Query on GNP | C [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C10 H17 N6 O13 P3 UQABYHGXWYXDTK-UUOKFMHZSA-N |  | Ligand Interaction | |
| ZN Query on ZN | E [auth C], F [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.77 Å
- R-Value Free: 0.264
- R-Value Work: 0.211
- R-Value Observed: 0.216
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 94.487 | α = 90 |
| b = 44.353 | β = 103.945 |
| c = 74.395 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2020-07-21
- Released Date: 2020-08-05 Deposition Author(s): Cookis, T., Mattos, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | MCB-1517295 |
Revision History (Full details and data files)
- Version 1.0: 2020-08-05
Type: Initial release
