7H4E | pdb_00007h4e

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z17497990 (A71EV2A-x0739)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 
    0.346 (Depositor), 0.380 (DCC) 
  • R-Value Work: 
    0.270 (Depositor), 0.320 (DCC) 
  • R-Value Observed: 
    0.274 (Depositor) 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals.

Lithgo, R.M.Tomlinson, C.W.E.Fairhead, M.Winokan, M.Thompson, W.Wild, C.Aschenbrenner, J.C.Balcomb, B.H.Marples, P.G.Chandran, A.V.Golding, M.Koekemoer, L.Williams, E.P.Wang, S.Ni, X.MacLean, E.Giroud, C.Godoy, A.S.Xavier, M.A.Walsh, M.Fearon, D.von Delft, F.

(2024) bioRxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protease 2A150Coxsackievirus A16Mutation(s): 0 
EC: 3.4.22.29
UniProt
Find proteins for Q65900 (Coxsackievirus A16 (strain G-10))
Explore Q65900 
Go to UniProtKB:  Q65900
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ65900
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
S07
Query on S07

Download Ideal Coordinates CCD File 
B [auth A]2-(2,4-dimethylphenoxy)-1-morpholin-4-yl-ethanone
C14 H19 N O3
SPKPARPPRVMDOW-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
H [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
DMS
Query on DMS

Download Ideal Coordinates CCD File 
D [auth A],
E [auth A],
F [auth A],
G [auth A]
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free:  0.346 (Depositor), 0.380 (DCC) 
  • R-Value Work:  0.270 (Depositor), 0.320 (DCC) 
  • R-Value Observed: 0.274 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.937α = 90
b = 56.426β = 94.71
c = 32.239γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
REFMAC5refinement
Aimlessdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU19AI171399

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-24
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Database references, Structure summary