7FEX

Crystal structure of Sus scrofa Schlafen11 N-terminal domain (2.69 A)

PDB DOI: https://doi.org/10.2210/pdb7FEX/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Sus scrofa
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-07-22 Released: 2023-06-07
Deposition Author(s): Hou, P., Hao, W., Cui, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.69 Å
R-Value Free: 0.258
R-Value Work: 0.215
R-Value Observed: 0.218

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural and biochemical characterization of Schlafen11 N-terminal domain.

Hou, P., Hao, W., Qin, B., Li, M., Zhao, R., Cui, S.

(2023) Nucleic Acids Res

Macromolecule Content

Total Structure Weight: 38.86 kDa
Atom Count: 2,559
Modelled Residue Count: 321
Deposited Residue Count: 339
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SLFN11	A	339	Sus scrofa	Mutation(s): 0 Gene Names: SLFN11
UniProt
Find proteins for A0A5G2RKN9 (Sus scrofa) Explore A0A5G2RKN9 Go to UniProtKB: A0A5G2RKN9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A5G2RKN9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.69 Å
R-Value Free: 0.258
R-Value Work: 0.215
R-Value Observed: 0.218
Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.991	α = 90
b = 64.991	β = 90
c = 344.018	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XSCALE	data scaling
SHARP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2023-06-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2023-06-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.