7FD3

IL-1RAPL2 TIR domain

PDB DOI: https://doi.org/10.2210/pdb7FD3/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-07-15 Released: 2022-07-20
Deposition Author(s): Wang, X., Zhou, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.99 Å
R-Value Free: 0.282
R-Value Work: 0.240
R-Value Observed: 0.242

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structural basis of the IL-1 receptor TIR domain-mediated IL-1 signaling

Zhou, J., Xiao, Y., Ren, Y., Ge, J., Wang, X.

(2022) iScience 25: 104508

DOI: https://doi.org/10.1016/j.isci.2022.104508

Macromolecule Content

Total Structure Weight: 19.05 kDa
Atom Count: 1,289
Modelled Residue Count: 155
Deposited Residue Count: 161
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
X-linked interleukin-1 receptor accessory protein-like 2	A	161	Homo sapiens	Mutation(s): 0 Gene Names: IL1RAPL2 EC: 3.2.2.6
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NP60 (Homo sapiens) Explore Q9NP60 Go to UniProtKB: Q9NP60
PHAROS: Q9NP60 GTEx: ENSG00000189108
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9NP60
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.99 Å
R-Value Free: 0.282
R-Value Work: 0.240
R-Value Observed: 0.242
Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.141	α = 90
b = 51.141	β = 90
c = 184.779	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2022-07-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-07-20
Type: Initial release
Version 1.1: 2022-08-10
Changes: Database references
Version 1.2: 2023-11-29
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.