7FCH | pdb_00007fch

IL-18Rbeta TIR domain

• PDB DOI: https://doi.org/10.2210/pdb7FCH/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-07-14 Released: 2022-07-20 
• Deposition Author(s): Wang, X., Zhou, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 
  0.223 (Depositor), 0.236 (DCC) 
• R-Value Work: 
  0.186 (Depositor) 
• R-Value Observed: 
  0.200 (Depositor) 

Starting Model: experimental

Literature

Structural basis of the IL-1 receptor TIR domain-mediated IL-1 signaling

Zhou, J., Xiao, Y., Ren, Y., Ge, J., Wang, X.

(2022) iScience 25: 104508

• DOI: https://doi.org/10.1016/j.isci.2022.104508

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 76.31 kDa 
• Atom Count: 4,790 
• Modeled Residue Count: 572 
• Deposited Residue Count: 664 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-18 receptor accessory protein	A, B, C, D	166	Homo sapiens	Mutation(s): 0  Gene Names: IL18RAP EC: 3.2.2.6
UniProt & NIH Common Fund Data Resources
Find proteins for O95256 (Homo sapiens) Explore O95256  Go to UniProtKB:  O95256
PHAROS:  O95256 GTEx:  ENSG00000115607

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free:  0.223 (Depositor), 0.236 (DCC) 
• R-Value Work:  0.186 (Depositor) 
• R-Value Observed: 0.200 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.76	α = 90
b = 161.074	β = 112.44
c = 52.164	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2022-07-20 
Deposition Author(s): Wang, X., Zhou, J.

Revision History  

• Version 1.0: 2022-07-20
  Type: Initial release
  
• Version 1.1: 2022-08-10
  Changes: Database references
• Version 1.2: 2023-11-29
  Changes: Data collection, Refinement description