7F4R | pdb_00007f4r

Crystal structure of MTA1

• PDB DOI: https://doi.org/10.2210/pdb7F4R/pdb

• Classification: DNA BINDING PROTEIN
• Organism(s): Tetrahymena thermophila SB210
• Expression System: Escherichia coli K-12
• Mutation(s): No 


• Deposited: 2021-06-21 Released: 2022-06-15 
• Deposition Author(s): Chen, J., Liu, L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free: 
  0.241 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.211 (Depositor) 

Starting Model: experimental

Literature

Structural basis for MTA1c-mediated DNA N6-adenine methylation

Chen, J., Hu, R., Chen, Y., Lin, X., Xiang, W., Chen, H., Yao, C., Liu, L.

(2022) Nat Commun 13: 3257

• DOI: https://doi.org/10.1038/s41467-022-31060-6

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 92.45 kDa 
• Atom Count: 6,260 
• Modeled Residue Count: 702 
• Deposited Residue Count: 808 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MT-a70 family protein	A, B, C, D	202	Tetrahymena thermophila SB210	Mutation(s): 0  EC: 2.1.1.348
UniProt
Find proteins for Q22GC0 (Tetrahymena thermophila (strain SB210)) Explore Q22GC0  Go to UniProtKB:  Q22GC0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free:  0.241 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.211 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.872	α = 90
b = 112.947	β = 97.81
c = 81.851	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2022-06-15 
Deposition Author(s): Chen, J., Liu, L.

Revision History  

• Version 1.0: 2022-06-15
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description