7EXE | pdb_00007exe

Crystal structure of mouse 14-3-3zeta in complex with doubly phosphorylated ADAM22 peptide

PDB DOI: https://doi.org/10.2210/pdb7EXE/pdb

Classification: SIGNALING PROTEIN
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-05-27 Released: 2021-11-24
Deposition Author(s): Yan, L., Okatsu, K., Fukai, S.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.267 (Depositor), 0.251 (DCC)
R-Value Work:
0.242 (Depositor)
R-Value Observed:
0.244 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7EXE

This is version 1.2 of the entry. See complete history.

Literature

LGI1-ADAM22 levels regulate seizure thresholds through 14-3-3 in mice

Yokoi, N., Fukata, Y., Okatsu, K., Yamagata, A., Yan, L., Sanbo, M., Miyazaki, Y., Goto, T., Abe, M., Natsume, R., Aiba, A., Sakimura, K., Meijer, D., Hirabayashi, M., Fukai, S., Fukata, M.

(2021) Cell Rep

Macromolecule Content

Total Structure Weight: 61.07 kDa
Atom Count: 3,704
Modeled Residue Count: 459
Deposited Residue Count: 533
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
14-3-3 protein zeta/delta	A, B	251	Mus musculus	Mutation(s): 0 Gene Names: Ywhaz
UniProt & NIH Common Fund Data Resources
Find proteins for P63101 (Mus musculus) Explore P63101 Go to UniProtKB: P63101
IMPC: MGI:109484
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P63101
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Disintegrin and metalloproteinase domain-containing protein 22	C	31	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9R1V6 (Mus musculus) Explore Q9R1V6 Go to UniProtKB: Q9R1V6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9R1V6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
SEP Query on SEP	C	SER	Phosphorylation	C₃ H₈ N O₆ P

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.267 (Depositor), 0.251 (DCC)
R-Value Work: 0.242 (Depositor)
R-Value Observed: 0.244 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.197	α = 90
b = 85.546	β = 90
c = 111.869	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XDS	data scaling
MOLREP	phasing
PHENIX	refinement

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-11-24

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	18H03983

Revision History (Full details and data files)

Version 1.0: 2021-11-24
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description
Version 1.2: 2024-10-09
Changes: Structure summary