7EVN

The cryo-EM structure of the DDX42-SF3b complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural Mechanisms of the RNA Helicases DDX42 and PRP5 in Pre-spliceosome Assembly

Zhang, X.Zhan, X.Yang, F.Bian, T.Lu, Y.Shi, Y.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Splicing factor 3B subunit 5A [auth B]86Homo sapiensMutation(s): 0 
Gene Names: SF3B5SF3B10
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PHAROS:  Q9BWJ5
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UniProt GroupQ9BWJ5
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Splicing factor 3B subunit 1B [auth C]872Homo sapiensMutation(s): 0 
Gene Names: SF3B1SAP155
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Find proteins for O75533 (Homo sapiens)
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UniProt GroupO75533
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
PHD finger-like domain-containing protein 5AC [auth D]110Homo sapiensMutation(s): 0 
Gene Names: PHF5A
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Find proteins for Q7RTV0 (Homo sapiens)
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UniProt GroupQ7RTV0
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Splicing factor 3B subunit 3D [auth A]1250Homo sapiensMutation(s): 0 
Gene Names: SF3B3KIAA0017SAP130
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
ATP-dependent RNA helicase DDX42E958Homo sapiensMutation(s): 0 
Gene Names: DDX42
EC: 3.6.4.13
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Find proteins for Q86XP3 (Homo sapiens)
Explore Q86XP3 
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Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31930059

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-03
    Type: Initial release