7EUM | pdb_00007eum

Crystal structure of apo Nmar_1308 protein at cryogenic temperature

PDB DOI: https://doi.org/10.2210/pdb7EUM/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Nitrosopumilus maritimus SCM1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-05-18 Released: 2021-09-29
Deposition Author(s): DeMirci, H., Destan, E., Yuksel, B., Ayan, E.
Funding Organization(s): National Science Foundation (NSF, United States), Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.284 (Depositor), 0.287 (DCC)
R-Value Work:
0.245 (Depositor), 0.247 (DCC)
R-Value Observed:
0.246 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7EUM

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of apo Nmar_1308 protein at cryogenic temperature

DeMirci, H., Destan, E., Yuksel, B., Ayan, E.

To be published.

Macromolecule Content

Total Structure Weight: 163.93 kDa
Atom Count: 10,771
Modeled Residue Count: 1,394
Deposited Residue Count: 1,524
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase/isomerase	A [auth C] B [auth D] C [auth F] D [auth A] E A [auth C], B [auth D], C [auth F], D [auth A], E, F [auth B]	254	Nitrosopumilus maritimus SCM1	Mutation(s): 0 Gene Names: Nmar_1308
UniProt
Find proteins for A9A2G5 (Nitrosopumilus maritimus (strain SCM1)) Explore A9A2G5 Go to UniProtKB: A9A2G5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A9A2G5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.284 (Depositor), 0.287 (DCC)
R-Value Work: 0.245 (Depositor), 0.247 (DCC)
R-Value Observed: 0.246 (Depositor)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.868	α = 90
b = 75.868	β = 90
c = 207.965	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-09-29

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	1231306
Other government	Turkey	118C270

Revision History (Full details and data files)

Version 1.0: 2021-09-29
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.