7EGY | pdb_00007egy

Recombinant head-to-tail dimeric E2 protein

PDB DOI: https://doi.org/10.2210/pdb7EGY/pdb

Classification: VIRAL PROTEIN
Organism(s): Hog cholera virus strain 'Chinese vaccine, Wuhan
Expression System: Oryza sativa
Mutation(s): No

Deposited: 2021-03-27 Released: 2022-03-30
Deposition Author(s): Ru, Q.X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.20 Å
R-Value Free:
0.444 (Depositor), 0.420 (DCC)
R-Value Work:
0.381 (Depositor), 0.400 (DCC)
R-Value Observed:
0.388 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Recombinant head-to-tail dimeric E2 protein

Ru, Q.X.

To be published.

Macromolecule Content

Total Structure Weight: 76.38 kDa
Atom Count: 3,402
Modeled Residue Count: 476
Deposited Residue Count: 684
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E2 protein	A, B	342	Hog cholera virus strain 'Chinese vaccine, Wuhan	Mutation(s): 0
UniProt
Find proteins for Q991S8 (Classical swine fever virus) Explore Q991S8 Go to UniProtKB: Q991S8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q991S8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 4.20 Å
R-Value Free: 0.444 (Depositor), 0.420 (DCC)
R-Value Work: 0.381 (Depositor), 0.400 (DCC)
R-Value Observed: 0.388 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 177.17	α = 90
b = 177.17	β = 90
c = 59.171	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
xia2	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2022-03-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-03-30
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description
Version 1.2: 2024-11-20
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.