7EFS | pdb_00007efs

Fructose-bisphosphate aldolase in Artemisia sieversiana pollen

PDB DOI: https://doi.org/10.2210/pdb7EFS/pdb

Classification: ALLERGEN
Organism(s): Artemisia sieversiana
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2021-03-23 Released: 2022-03-30
Deposition Author(s): Li, Z., Wei, C., Ji Fu, W., Zhi Qiang, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.259 (Depositor), 0.262 (DCC)
R-Value Work:
0.209 (Depositor), 0.219 (DCC)
R-Value Observed:
0.212 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Identification of fructose-bisphosphate aldose as a novel type of major allergen from Artemisia pollen

li, Z., Ji Fu, W., Zhi Qiang, X.

To be published.

Macromolecule Content

Total Structure Weight: 158.29 kDa
Atom Count: 10,397
Modeled Residue Count: 1,357
Deposited Residue Count: 1,460
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-bisphosphate aldolase	A, B, C, D	365	Artemisia sieversiana	Mutation(s): 0 EC: 4.1.2.13
UniProt
Find proteins for A0A2U1QAU9 (Artemisia annua) Explore A0A2U1QAU9 Go to UniProtKB: A0A2U1QAU9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2U1QAU9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.259 (Depositor), 0.262 (DCC)
R-Value Work: 0.209 (Depositor), 0.219 (DCC)
R-Value Observed: 0.212 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.007	α = 90
b = 129.689	β = 90
c = 157.343	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	data reduction
PHENIX	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2022-03-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-03-30
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.