7E4H

Cryo-EM structure of the yeast mitochondrial SAM-Tom40 complex at 3.0 angstrom


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insight into the SAM-mediated assembly of the mitochondrial TOM core complex.

Wang, Q.Guan, Z.Qi, L.Zhuang, J.Wang, C.Hong, S.Yan, L.Wu, Y.Cao, X.Cao, J.Yan, J.Zou, T.Liu, Z.Zhang, D.Yan, C.Yin, P.

(2021) Science 373: 1377-1381

  • DOI: https://doi.org/10.1126/science.abh0704
  • Primary Citation of Related Structures:  
    7E4H, 7E4I

  • PubMed Abstract: 

    β barrel outer membrane proteins (β-OMPs) play vital roles in mitochondria, chloroplasts, and Gram-negative bacteria. Evolutionarily conserved complexes such as the mitochondrial sorting and assembly machinery (SAM) mediate the assembly of β-OMPs. We investigated the SAM-mediated assembly of the translocase of the outer membrane (TOM) core complex. Cryo–electron microscopy structures of SAM–fully folded Tom40 and the SAM-Tom40/Tom5/Tom6 complexes at ~3-angstrom resolution reveal that Sam37 stabilizes the mature Tom40 mainly through electrostatic interactions, thus facilitating subsequent TOM assembly. These results support the β barrel switching model and provide structural insights into the assembly and release of β barrel complexes.


  • Organizational Affiliation

    National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sorting assembly machinery 50 kDa subunit485Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SAM50TOB55YNL026WN2802
Membrane Entity: Yes 
UniProt
Find proteins for P53969 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53969 
Go to UniProtKB:  P53969
Entity Groups  
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UniProt GroupP53969
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Sorting assembly machinery 35 kDa subunit329Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SAM35OMP85TOB38TOM38YHR083W
Membrane Entity: Yes 
UniProt
Find proteins for P14693 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P14693 
Go to UniProtKB:  P14693
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UniProt GroupP14693
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Sorting assembly machinery 37 kDa subunit351Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SAM37MAS37PET3027TOM37YMR060CYM9796.13C
Membrane Entity: Yes 
UniProt
Find proteins for P50110 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P50110
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UniProt GroupP50110
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM40428Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TOM40ISP42MOM38YMR203WYM8325.04
Membrane Entity: Yes 
UniProt
Find proteins for P23644 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P23644 
Go to UniProtKB:  P23644
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UniProt GroupP23644
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31722017

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-01
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references