7E26 | pdb_00007e26

Structure of PfFNT in apo state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.29 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7E26

This is version 1.3 of the entry. See complete history

Literature

Structural characterization of the Plasmodium falciparum lactate transporter PfFNT alone and in complex with antimalarial compound MMV007839 reveals its inhibition mechanism.

Peng, X.Wang, N.Zhu, A.Xu, H.Li, J.Zhou, Y.Wang, C.Xiao, Q.Guo, L.Liu, F.Jia, Z.J.Duan, H.Hu, J.Yuan, W.Geng, J.Yan, C.Jiang, X.Deng, D.

(2021) PLoS Biol 19: e3001386-e3001386

  • DOI: https://doi.org/10.1371/journal.pbio.3001386
  • Primary Citation Related Structures: 
    7E26, 7E27

  • PubMed Abstract: 

    Plasmodium falciparum, the deadliest causal agent of malaria, caused more than half of the 229 million malaria cases worldwide in 2019. The emergence and spreading of frontline drug-resistant Plasmodium strains are challenging to overcome in the battle against malaria and raise urgent demands for novel antimalarial agents. The P. falciparum formate-nitrite transporter (PfFNT) is a potential drug target due to its housekeeping role in lactate efflux during the intraerythrocytic stage. Targeting PfFNT, MMV007839 was identified as a lead compound that kills parasites at submicromolar concentrations. Here, we present 2 cryogenic-electron microscopy (cryo-EM) structures of PfFNT, one with the protein in its apo form and one with it in complex with MMV007839, both at 2.3 Å resolution. Benefiting from the high-resolution structures, our study provides the molecular basis for both the lactate transport of PfFNT and the inhibition mechanism of MMV007839, which facilitates further antimalarial drug design.


  • Organizational Affiliation
    • Department of Obstetrics, Key Laboratory of Birth Defects and Related Disease of Women and Children of MOE, State Key Laboratory of Biotherapy, West China Second Hospital, Sichuan University, Chengdu, China.

Macromolecule Content 

  • Total Structure Weight: 172.46 kDa 
  • Atom Count: 11,360 
  • Modeled Residue Count: 1,435 
  • Deposited Residue Count: 1,545 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Formate-nitrite transporterA [auth D],
B [auth A],
C [auth B],
D [auth C],
E
309Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: PF3D7_0316600
Membrane Entity: Yes 
UniProt
Find proteins for O77389 (Plasmodium falciparum (isolate 3D7))
Explore O77389 
Go to UniProtKB:  O77389
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO77389
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.29 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-18
    Type: Initial release
  • Version 1.1: 2022-03-02
    Changes: Database references
  • Version 1.2: 2023-05-17
    Changes: Structure summary
  • Version 1.3: 2024-06-05
    Changes: Data collection