7E1X

Cryo-EM structure of hybrid respiratory supercomplex consisting of Mycobacterium tuberculosis complexIII and Mycobacterium smegmatis complexIV in presence of TB47


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structure of hybrid respiratory supercomplex consisting of Mycobacterium tuberculosis complexIII and Mycobacterium smegmatis complexIV in presence of TB47

Zhou, S.Wang, W.Gao, Y.Gong, H.Rao, Z.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 2A [auth E], H [auth Q]341Mycolicibacterium smegmatis MC2 51Mutation(s): 0 
EC: 7.1.1.9
Membrane Entity: Yes 
UniProt
Find proteins for A0R057 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 1B [auth F], I [auth R]575Mycolicibacterium smegmatis MC2 51Mutation(s): 0 
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 3C [auth G], J [auth S]203Mycolicibacterium smegmatis MC2 51Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0R049 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c oxidase polypeptide 4D [auth H], K [auth T]139Mycolicibacterium smegmatis MC2 51Mutation(s): 0 
EC: 7.1.1.9
Membrane Entity: Yes 
UniProt
Find proteins for A0R056 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit CtaJE [auth I], L [auth U]79Mycolicibacterium smegmatis MC2 51Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0R1B6 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Uncharacterized protein MSMEG_4692/MSMEI_4575F [auth J], M [auth V]157Mycolicibacterium smegmatis MC2 51Mutation(s): 0 
UniProt
Find proteins for A0R1B5 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Prokaryotic respiratory supercomplex associate factor 1 PRSAF1G [auth D], N [auth P]100Mycolicibacterium smegmatis MC2 51Mutation(s): 0 
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome bc1 complex cytochrome b subunitR [auth B], O [auth N]549Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: qcrBRv2196MTCY190.07
EC: 7.1.1.8
Membrane Entity: Yes 
UniProt
Find proteins for P9WP37 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome bc1 complex Rieske iron-sulfur subunitS [auth A], P [auth M]429Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: qcrARv2195MTCY190.06
Membrane Entity: Yes 
UniProt
Find proteins for P9WH23 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome bc1 complex cytochrome c subunitT [auth C], Q [auth O]280Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: qcrCRv2194MTCY190.05
EC: 7.1.1.8
Membrane Entity: Yes 
UniProt
Find proteins for P9WP35 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
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Small Molecules
Ligands 11 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CDL (Subject of Investigation/LOI)
Query on CDL

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AB [auth M] , DB [auth O] , EA [auth D] , HA [auth R] , IA [auth R] , KB [auth B] , MB [auth B] , NB [auth B] , 
AB [auth M], DB [auth O], EA [auth D], HA [auth R], IA [auth R], KB [auth B], MB [auth B], NB [auth B], OB [auth B], PA [auth P], PB [auth B], TA [auth N], UA [auth N], VA [auth N], W [auth F], WB [auth A], X [auth F]
CARDIOLIPIN
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
 Ligand Interaction
9YF (Subject of Investigation/LOI)
Query on 9YF

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BB [auth M], CB [auth M], VB [auth A], XB [auth A](2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate
C44 H85 O13 P
GRDWPDVMAXODDM-LZYRCPELSA-N
 Ligand Interaction
HEA (Subject of Investigation/LOI)
Query on HEA

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BA [auth F], CA [auth F], MA [auth R], NA [auth R]HEME-A
C49 H56 Fe N4 O6
ZGGYGTCPXNDTRV-PRYGPKJJSA-L
 Ligand Interaction
MQ9 (Subject of Investigation/LOI)
Query on MQ9

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AC [auth C], EB [auth O], FB [auth O], QB [auth B], RB [auth B], UB [auth A], WA [auth N], XA [auth N]MENAQUINONE-9
C56 H80 O2
WCRXHNIUHQUASO-ABFXHILCSA-N
 Ligand Interaction
9Y0 (Subject of Investigation/LOI)
Query on 9Y0

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DA [auth G], OA [auth S](2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate
C39 H76 N O8 P
DVXMEPWDARXHCX-OTMQOFQLSA-N
 Ligand Interaction
HEC (Subject of Investigation/LOI)
Query on HEC

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GB [auth O], HB [auth O], YB [auth C], ZB [auth C]HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
 Ligand Interaction
HEM (Subject of Investigation/LOI)
Query on HEM

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IB [auth B], JB [auth B], QA [auth N], RA [auth N]PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
HV0
Query on HV0

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SB [auth B], YA [auth N]5-methoxy-2-methyl-~{N}-[[4-[4-[4-(trifluoromethyloxy)phenyl]piperidin-1-yl]phenyl]methyl]pyrazolo[1,5-a]pyridine-3-carboxamide
C29 H29 F3 N4 O3
HQECXZKIRDUGLC-UHFFFAOYSA-N
 Ligand Interaction
PLM (Subject of Investigation/LOI)
Query on PLM

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JA [auth R], LB [auth B], SA [auth N], Y [auth F]PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
FES
Query on FES

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TB [auth A], ZA [auth M]FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
CU
Query on CU

Download Ideal Coordinates CCD File 
AA [auth F], FA [auth Q], GA [auth Q], KA [auth R], LA [auth R], U [auth E], V [auth E], Z [auth F]COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB37030201
Chinese Academy of SciencesChinaXDB37020203
Chinese Academy of SciencesChina2017YFC0840300
National Natural Science Foundation of China (NSFC)China81520108019
National Natural Science Foundation of China (NSFC)China813300237

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-27
    Type: Initial release