7DUD | pdb_00007dud

Crystal Structure of erWalK

PDB DOI: https://doi.org/10.2210/pdb7DUD/pdb

Classification: TRANSFERASE
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-01-08 Released: 2022-01-19
Deposition Author(s): Huang, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.248 (Depositor), 0.249 (DCC)
R-Value Work:
0.225 (Depositor), 0.225 (DCC)
R-Value Observed:
0.226 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of erWalK

Huang, W.

To be published.

Macromolecule Content

Total Structure Weight: 34.17 kDa
Atom Count: 2,569
Modeled Residue Count: 294
Deposited Residue Count: 298
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sensor protein kinase WalK	A, B	149	Staphylococcus aureus	Mutation(s): 0 Gene Names: walK, SAMEA103891408_00013, SAMEA103891434_00037 EC: 2.7.13.3
UniProt
Find proteins for Q2G2U4 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2G2U4 Go to UniProtKB: Q2G2U4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2G2U4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.248 (Depositor), 0.249 (DCC)
R-Value Work: 0.225 (Depositor), 0.225 (DCC)
R-Value Observed: 0.226 (Depositor)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.63	α = 90
b = 66.63	β = 90
c = 80.083	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2022-01-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-01-19
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.