7DKJ

Hemagglutinin Influenza A virus (A/Okuda/1957(H2N2) bound with a neutralizing antibody


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Hemagglutinin Influenza A virus (A/Okuda/1957(H2N2) bound with a neutralizing antibody

Makino-Okamura, C.Hata, H.Watanabe, T.Kim, S.Hebrard, M.Sato, R.Yan, M.Onodera, T.Takahashi, Y.Li, Q.Taylor, T.Okuno, Y.Kurosaki, T.Tomabechi, Y.Uchikubo-Kamo, T.Kamada, K.Shirouzu, M.Fukuyama, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
HemagglutininA, D [auth E], G [auth I]599Influenza A virus (A/Okuda/1957(H2N2))Mutation(s): 4 
Gene Names: HA
UniProt
Find proteins for A0A0A7E4R0 (Influenza A virus)
Explore A0A0A7E4R0 
Go to UniProtKB:  A0A0A7E4R0
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Fv-clasp heavy chainB [auth C], E [auth G], H [auth K]203Mus musculusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Fv-clasp light chainC [auth D], F [auth H], I [auth L]189Mus musculusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Oligosaccharides

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Entity ID: 4
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseJ [auth B], K [auth F], L [auth J], M, N, O3N-Glycosylation Oligosaccharides Interaction
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG (Subject of Investigation/LOI)
Query on NAG

Download Ideal Coordinates CCD File 
P [auth A] , Q [auth A] , R [auth A] , S [auth E] , T [auth E] , U [auth E] , V [auth I] , W [auth I] , 
P [auth A], Q [auth A], R [auth A], S [auth E], T [auth E], U [auth E], V [auth I], W [auth I], X [auth I]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-24
    Type: Initial release