7DES | pdb_00007des

Acyl-Coenzyme A Binding Protein 103 (LMJF_17_0620) of Leishmania Major

• PDB DOI: https://doi.org/10.2210/pdb7DES/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Leishmania major
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2020-11-04 Released: 2022-05-04 
• Deposition Author(s): Verma, S., Sundd, M., Makde, R.D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 
  0.194 (Depositor), 0.190 (DCC) 
• R-Value Work: 
  0.165 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.166 (Depositor) 

Starting Model: experimental

Literature

Acyl-Coenzyme A Binding Protein 103 (LMJF_17_0620) of Leishmania Major

Verma, S., Sundd, M., Makde, R.D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 11.6 kDa 
• Atom Count: 855 
• Modeled Residue Count: 96 
• Deposited Residue Count: 103 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ACB domain-containing protein	A	103	Leishmania major	Mutation(s): 0  Gene Names: LMJF_17_0620
UniProt
Find proteins for Q4QED2 (Leishmania major) Explore Q4QED2  Go to UniProtKB:  Q4QED2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FMT (Subject of Investigation/LOI)	B [auth A], C [auth A], D [auth A]	FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free:  0.194 (Depositor), 0.190 (DCC) 
• R-Value Work:  0.165 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.166 (Depositor) 

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.946	α = 90
b = 36.996	β = 104.016
c = 58.611	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
pointless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2022-05-04 
Deposition Author(s): Verma, S., Sundd, M., Makde, R.D.

Revision History  

• Version 1.0: 2022-05-04
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description