7DE3 | pdb_00007de3

Human adenylate kinase 1 (hAK1) mutant-R128W

• PDB DOI: https://doi.org/10.2210/pdb7DE3/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-11-01 Released: 2021-11-10 
• Deposition Author(s): Lin, W.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.205 (Depositor), 0.210 (DCC) 

Starting Model: experimental

Literature

Structure of human adenylate kinase 1 mutant-R128W.

Lin, W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: NMR relaxation study

Macromolecule Content 

• Total Structure Weight: 21.7 kDa 
• Atom Count: 1,625 
• Modeled Residue Count: 185 
• Deposited Residue Count: 194 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenylate kinase isoenzyme 1	A	194	Homo sapiens	Mutation(s): 1  Gene Names: AK1 EC: 2.7.4.3 (PDB Primary Data), 2.7.4.6 (PDB Primary Data), 2.7.4.4 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P00568 (Homo sapiens) Explore P00568  Go to UniProtKB:  P00568
PHAROS:  P00568 GTEx:  ENSG00000106992

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.205 (Depositor), 0.210 (DCC) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.167	α = 90
b = 95.167	β = 90
c = 47.961	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-11-10 
Deposition Author(s): Lin, W.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2021-11-10
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description