7DE3 | pdb_00007de3

Human adenylate kinase 1 (hAK1) mutant-R128W

PDB DOI: https://doi.org/10.2210/pdb7DE3/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-11-01 Released: 2021-11-10
Deposition Author(s): Lin, W.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.260 (Depositor), 0.254 (DCC)
R-Value Work:
0.205 (Depositor), 0.206 (DCC)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Structure of human adenylate kinase 1 mutant-R128W.

Lin, W.

To be published.

Macromolecule Content

Total Structure Weight: 21.7 kDa
Atom Count: 1,625
Modeled Residue Count: 185
Deposited Residue Count: 194
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenylate kinase isoenzyme 1	A	194	Homo sapiens	Mutation(s): 1 Gene Names: AK1 EC: 2.7.4.3 (PDB Primary Data), 2.7.4.6 (PDB Primary Data), 2.7.4.4 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P00568 (Homo sapiens) Explore P00568 Go to UniProtKB: P00568
PHAROS: P00568 GTEx: ENSG00000106992
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00568
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.260 (Depositor), 0.254 (DCC)
R-Value Work: 0.205 (Depositor), 0.206 (DCC)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.167	α = 90
b = 95.167	β = 90
c = 47.961	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-11-10

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2021-11-10
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.