7DAM | pdb_00007dam

Adenosine triphosphate phosphoribosyltransferase from Vibrio cholerae

PDB DOI: https://doi.org/10.2210/pdb7DAM/pdb

Classification: TRANSFERASE
Organism(s): Vibrio cholerae M66-2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-10-16 Released: 2021-10-20
Deposition Author(s): Pal, R.K., Gourinath, S., Biswal, B.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.265 (Depositor), 0.262 (DCC)
R-Value Work:
0.210 (Depositor), 0.210 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 7DAM

This is version 1.1 of the entry. See complete history.

Literature

Adenosine triphosphate phosphoribosyltransferase from Vibrio cholerae

Pal, R.K., Gourinath, S., Biswal, B.K.

To be published.

Macromolecule Content

Total Structure Weight: 69.16 kDa
Atom Count: 3,764
Modeled Residue Count: 556
Deposited Residue Count: 620
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP phosphoribosyltransferase	A, B	310	Vibrio cholerae M66-2	Mutation(s): 0 Gene Names: hisG, VCM66_1088 EC: 2.4.2.17
UniProt
Find proteins for Q9KSX4 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KSX4 Go to UniProtKB: Q9KSX4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KSX4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.265 (Depositor), 0.262 (DCC)
R-Value Work: 0.210 (Depositor), 0.210 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.512	α = 90
b = 117.512	β = 90
c = 121.339	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2021-10-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-10-20
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.