7D6F

The crystal structure of ARMS-PBM/MAGI2-PDZ4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.238 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.0 of the entry. See complete history


Literature

The crystal structure of ARMS-PBM/MAGI2-PDZ4

Ye, J.Zhang, Y.Zhong, Z.Wang, C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2A101Mus musculusMutation(s): 0 
Gene Names: Magi2Acvrinp1Aip1Arip1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9WVQ1 (Mus musculus)
Explore Q9WVQ1 
Go to UniProtKB:  Q9WVQ1
IMPC:  MGI:1354953
Protein Feature View
Expand
  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Kinase D-interacting substrate of 220 kDaB19Rattus norvegicusMutation(s): 0 
Gene Names: Kidins220Arms
UniProt
Find proteins for Q9EQG6 (Rattus norvegicus)
Explore Q9EQG6 
Go to UniProtKB:  Q9EQG6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL (Subject of Investigation/LOI)
Query on GOL

Download Ideal Coordinates CCD File 
C [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.238 
  • Space Group: C 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.045α = 90
b = 95.666β = 90
c = 35.167γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-04
    Type: Initial release
  • Version 2.0: 2021-09-01
    Type: Coordinate replacement
    Reason: Real space R-factor
    Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Non-polymer description, Refinement description, Structure summary