7D59

cryo-EM structure of human RNA polymerase III in apo state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural insights into transcriptional regulation of human RNA polymerase III.

Wang, Q.Li, S.Wan, F.Xu, Y.Wu, Z.Cao, M.Lan, P.Lei, M.Wu, J.

(2021) Nat Struct Mol Biol 28: 220-227

  • DOI: https://doi.org/10.1038/s41594-021-00557-x
  • Primary Citation of Related Structures:  
    7D58, 7D59

  • PubMed Abstract: 

    RNA polymerase III (Pol III) synthesizes structured, essential small RNAs, such as transfer RNA, 5S ribosomal RNA and U6 small nuclear RNA. Pol III, the largest nuclear RNA polymerase, is composed of a conserved core region and eight constitutive regulatory subunits, but how these factors jointly regulate Pol III transcription remains unclear. Here, we present cryo-EM structures of human Pol III in both apo and elongating states, which unveil both an orchestrated movement during the apo-to-elongating transition and an unexpected apo state in which the RPC7 subunit tail occupies the DNA-RNA-binding cleft of Pol III, suggesting that RPC7 plays important roles in both autoinhibition and transcription initiation. The structures also reveal a proofreading mechanism for the TFIIS-like subunit RPC10, which stably retains its catalytic position in the secondary channel, explaining the high fidelity of Pol III transcription. Our work provides an integrated picture of the mechanism of Pol III transcription regulation.


  • Organizational Affiliation

    State Key Laboratory of Oncogenes and Related Genes, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC11,390Homo sapiensMutation(s): 0 
EC: 2.7.7.6
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GTEx:  ENSG00000148606 
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UniProt GroupO14802
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC21,133Homo sapiensMutation(s): 0 
EC: 2.7.7.6
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GTEx:  ENSG00000013503 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC1346Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171453 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC9148Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000241258 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC1210Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000099817 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC2127Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100142 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC8204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100413 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC3150Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163882 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC10108Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161980 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC567Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000177700 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC2133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186184 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC458Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000147669 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC5708Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000058600 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC4398Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000168495 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC3534Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186141 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC6316Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000132664 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC7223Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000113356 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-17
    Type: Initial release
  • Version 1.1: 2021-02-24
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references