7CSN | pdb_00007csn

Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 1.00 A resolution

• PDB DOI: https://doi.org/10.2210/pdb7CSN/pdb

• Classification: HYDROLASE
• Organism(s): Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-08-15 Released: 2020-09-02 
• Deposition Author(s): Viswanathan, V., Sharma, P., Singh, P.K., Kaur, P., Sharma, S., Singh, T.P.
• Funding Organization(s): Department of Science & Technology (DST, India)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.00 Å
• R-Value Free: 
  0.157 (Depositor), 0.170 (DCC) 
• R-Value Work: 
  0.145 (Depositor), 0.150 (DCC) 

Starting Model: experimental

Literature

Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 1.00 A resolution

Viswanathan, V., Sharma, P., Singh, P.K., Kaur, P., Sharma, S., Singh, T.P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 21.25 kDa 
• Atom Count: 1,775 
• Modeled Residue Count: 196 
• Deposited Residue Count: 196 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-tRNA hydrolase	A	196	Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841	Mutation(s): 0  Gene Names: pth, HMPREF0010_01329 EC: 3.1.1.29
UniProt
Find proteins for D0C9L6 (Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP 70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)) Explore D0C9L6  Go to UniProtKB:  D0C9L6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.00 Å
• R-Value Free:  0.157 (Depositor), 0.170 (DCC) 
• R-Value Work:  0.145 (Depositor), 0.150 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34	α = 90
b = 66.25	β = 90
c = 76.23	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-09-02 
Deposition Author(s): Viswanathan, V., Sharma, P., Singh, P.K., Kaur, P., Sharma, S., Singh, T.P.

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Funding Organization	Location	Grant Number
Department of Science & Technology (DST, India)	India	PDF/2018/000008

Revision History  

• Version 1.0: 2020-09-02
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Derived calculations, Refinement description