7CQV

Complex of TRP_CBS1 and Calmodulin_Nlobe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.206 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Calmodulin binds to Drosophila TRP with an unexpected mode.

Chen, W.Shen, Z.Asteriti, S.Chen, Z.Ye, F.Sun, Z.Wan, J.Montell, C.Hardie, R.C.Liu, W.Zhang, M.

(2021) Structure 29: 330-344.e4

  • DOI: https://doi.org/10.1016/j.str.2020.11.016
  • Primary Citation of Related Structures:  
    7CQH, 7CQP, 7CQV

  • PubMed Abstract: 

    Drosophila TRP is a calcium-permeable cation channel essential for fly visual signal transduction. During phototransduction, Ca 2+ mediates both positive and negative feedback regulation on TRP channel activity, possibly via binding to calmodulin (CaM). However, the molecular mechanism underlying Ca 2+ modulated CaM/TRP interaction is poorly understood. Here, we discover an unexpected, Ca 2+ -dependent binding mode between CaM and TRP. The TRP tail contains two CaM binding sites (CBS1 and CBS2) separated by an ∼70-residue linker. CBS1 binds to the CaM N-lobe and CBS2 recognizes the CaM C-lobe. Structural studies reveal the lobe-specific binding of CaM to CBS1&2. Mutations introduced in both CBS1 and CBS2 eliminated CaM binding in full-length TRP, but surprisingly had no effect on the response to light under physiological conditions, suggesting alternative mechanisms governing Ca 2+ -mediated feedback on the channel activity. Finally, we discover that TRPC4, the closest mammalian paralog of Drosophila TRP, adopts a similar CaM binding mode.


  • Organizational Affiliation

    Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China; Greater Bay Biomedical Innocenter, Shenzhen Bay Laboratory, Shenzhen 518055, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
AT15141pA [auth E],
B [auth A]
80Drosophila melanogasterMutation(s): 0 
Gene Names: Cam-RB
UniProt
Find proteins for C6SUZ2 (Drosophila melanogaster)
Explore C6SUZ2 
Go to UniProtKB:  C6SUZ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC6SUZ2
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transient receptor potential proteinC [auth B]82Drosophila melanogasterMutation(s): 0 
Gene Names: trpCG7875
UniProt
Find proteins for P19334 (Drosophila melanogaster)
Explore P19334 
Go to UniProtKB:  P19334
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19334
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.206 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 98.449α = 90
b = 98.449β = 90
c = 134.263γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
DENZOdata reduction
HKL-2000data scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2021-06-23 
  • Deposition Author(s): Shen, Z.S.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31670765
National Natural Science Foundation of China (NSFC)China31870746

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-23
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Database references, Refinement description