7CP2

Crystal structure of the African swine fever virus core shell protein p15

PDB DOI: https://doi.org/10.2210/pdb7CP2/pdb

Classification: VIRAL PROTEIN
Organism(s): African swine fever virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-08-05 Released: 2020-10-28
Deposition Author(s): Liu, K.F., Meng, Y.M., Chai, Y., Li, L.J., Sun, H., Gao, G.F., Tan, S.G., Qi, J.X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free: 0.246
R-Value Work: 0.219
R-Value Observed: 0.220

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the African swine fever virus core shell protein p15

Liu, K.F., Meng, Y.M., Chai, Y., Li, L.J., Sun, H., Gao, G.F., Tan, S.G., Qi, J.X.

(2021) Biosaf Health

DOI: https://doi.org/10.1016/j.bsheal.2020.09.002

Macromolecule Content

Total Structure Weight: 51.42 kDa
Atom Count: 3,646
Modelled Residue Count: 440
Deposited Residue Count: 456
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CP530R	A, B, C	152	African swine fever virus	Mutation(s): 0 Gene Names: CP530R, CP530R CDS, ASFV-Georgia_4-118
UniProt
Find proteins for Q65179 (African swine fever virus (strain Badajoz 1971 Vero-adapted)) Explore Q65179 Go to UniProtKB: Q65179
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q65179
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free: 0.246
R-Value Work: 0.219
R-Value Observed: 0.220
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 125.037	α = 90
b = 53.601	β = 92.89
c = 74.892	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2020-10-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-10-28
Type: Initial release
Version 1.1: 2021-02-03
Changes: Data collection
Version 1.2: 2021-05-19
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.