7COF

Cholesterol esterase from Burkholderia stabilis (orthorhombic crystal form)

  • Classification: HYDROLASE
  • Organism(s): Burkholderia stabilis
  • Mutation(s): No 
  • Membrane Protein: Yes  OPM

  • Deposited: 2020-08-04 Released: 2020-12-16 
  • Deposition Author(s): Yasutake, Y., Tamura, T.
  • Funding Organization(s): New Energy and Industrial Technology Development Organization (NEDO)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.118 
  • R-Value Work: 0.098 
  • R-Value Observed: 0.099 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Bacterial triacylglycerol lipase is a potential cholesterol esterase: Identification of a key determinant for sterol-binding specificity.

Yasutake, Y.Konishi, K.Muramatsu, S.Yoshida, K.Aburatani, S.Sakasegawa, S.I.Tamura, T.

(2021) Int J Biol Macromol 167: 578-586


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Alpha/beta hydrolaseA320Burkholderia stabilisMutation(s): 0 
Gene Names: BSFP_052170
Membrane Entity: Yes 
UniProt
Find proteins for A0A1Y1BQV9 (Burkholderia stabilis)
Explore A0A1Y1BQV9 
Go to UniProtKB:  A0A1Y1BQV9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1Y1BQV9
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
IMD
Query on IMD

Download Ideal Coordinates CCD File 
E [auth A]IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
 Ligand Interaction
IPA
Query on IPA

Download Ideal Coordinates CCD File 
F [auth A],
G [auth A]
ISOPROPYL ALCOHOL
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
B [auth A]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.118 
  • R-Value Work: 0.098 
  • R-Value Observed: 0.099 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.241α = 90
b = 61.365β = 90
c = 147.177γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
New Energy and Industrial Technology Development Organization (NEDO)Japan--

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release