7CMR | pdb_00007cmr

The Crystal Structure of human MYST1 from Biortus.

• PDB DOI: https://doi.org/10.2210/pdb7CMR/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-07-28 Released: 2020-08-12 
• Deposition Author(s): Wang, F., Lin, D., Lv, Z., Xu, X., Tan, J., Shang, H.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.263 (Depositor), 0.266 (DCC) 
• R-Value Work: 
  0.218 (Depositor), 0.223 (DCC) 

Starting Model: experimental

Literature

The Crystal Structure of human MYST1 from Biortus.

Wang, F., Lin, D., Lv, Z., Xu, X., Tan, J., Shang, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 54.69 kDa 
• Atom Count: 2,246 
• Modeled Residue Count: 263 
• Deposited Residue Count: 475 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone acetyltransferase KAT8	A	475	Homo sapiens	Mutation(s): 0  Gene Names: KAT8, MOF, MYST1, PP7073 EC: 2.3.1.48 (PDB Primary Data), 2.3.1 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H7Z6 (Homo sapiens) Explore Q9H7Z6  Go to UniProtKB:  Q9H7Z6
PHAROS:  Q9H7Z6 GTEx:  ENSG00000103510

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ALY	A	L-PEPTIDE LINKING	C8 H16 N2 O3		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.263 (Depositor), 0.266 (DCC) 
• R-Value Work:  0.218 (Depositor), 0.223 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.399	α = 90
b = 58.322	β = 90
c = 121.12	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-08-12 
Deposition Author(s): Wang, F., Lin, D., Lv, Z., Xu, X., Tan, J., Shang, H.

Revision History  

• Version 1.0: 2020-08-12
  Type: Initial release
  
• Version 1.1: 2022-02-09
  Changes: Database references, Structure summary
• Version 1.2: 2023-11-29
  Changes: Data collection, Derived calculations, Refinement description
• Version 1.3: 2024-10-30
  Changes: Structure summary