7CMA

Structure of A151R from African swine fever virus Georgia


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.250 

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This is version 1.1 of the entry. See complete history


Literature

Structure basis of non-structural protein pA151R from African Swine Fever Virus.

Huang, J.W.Niu, D.Liu, K.Wang, Q.Ma, L.Chen, C.C.Zhang, L.Liu, W.Zhou, S.Min, J.Wu, S.Yang, Y.Guo, R.T.

(2020) Biochem Biophys Res Commun 532: 108-113

  • DOI: https://doi.org/10.1016/j.bbrc.2020.08.011
  • Primary Citation of Related Structures:  
    7CMA

  • PubMed Abstract: 

    African Swine Fever Virus (ASFV) is an enveloped double-stranded DNA icosahedral virus that causes the devastating hemorrhagic fever of pigs. ASFV infections severely impact swine production and cause an enormous economic loss, but no effective vaccine and therapeutic regimen is available. pA151R is a non-structural protein of ASFV, which is expressed at both early and late stages of viral infection. Significantly, pA151R may play a key role in ASFV replication and virus assembly as suppressing pA151R expression can reduce virus replication. However, little is known about the functional and structural mechanisms of pA151R because it shares a very low sequence identity to known structures. It was proposed that pA151R might participate in the redox pathway owing to the presence of a thioredoxin active site feature, the WCTKC motif. In this study, we determined the crystal structure of pA151R. Based on the crystal structure, we found that pA151R comprises of a central five-stranded β-sheet packing against two helices on one side and an incompact C-terminal region containing the WCTKC motif on the other side. Notably, two cysteines in the WCTKC motif, an additional cysteine C116 from the β7-β8 loop together with ND1 of H109 coordinate a Zn 2+ ion to form a Zn-binding motif. These findings suggest that the structure of pA151R is significantly different from that of typical thioredoxins. Our structure should provide molecular insights into the understanding of functional and structural mechanisms of pA151R from ASFV and shall benefit the development of prophylactic and therapeutic anti-ASFV agents.


  • Organizational Affiliation

    State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, 430062, PR China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
A151RA,
B [auth C]
158African swine fever virus Georgia 2007/1Mutation(s): 0 
UniProt
Find proteins for A0A2X0TC55 (African swine fever virus)
Explore A0A2X0TC55 
Go to UniProtKB:  A0A2X0TC55
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2X0TC55
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.250 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.869α = 90
b = 49.869β = 90
c = 128.081γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-02
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references