7CJN | pdb_00007cjn

grass carp interleukin-2

PDB DOI: https://doi.org/10.2210/pdb7CJN/pdb

Classification: CYTOKINE
Organism(s): Ctenopharyngodon idella
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-07-12 Released: 2021-07-14
Deposition Author(s): Wang, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.66 Å
R-Value Free:
0.412 (Depositor), 0.410 (DCC)
R-Value Work:
0.378 (Depositor), 0.380 (DCC)
R-Value Observed:
0.378 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into the co-evolution of IL-2 and its private receptor

Wang, J.

To be published.

Macromolecule Content

Total Structure Weight: 27.98 kDa
Atom Count: 1,850
Modeled Residue Count: 230
Deposited Residue Count: 242
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin	A [auth B], B [auth D]	121	Ctenopharyngodon idella	Mutation(s): 0 Gene Names: IL-2
UniProt
Find proteins for A0A4D6NYT7 (Ctenopharyngodon idella) Explore A0A4D6NYT7 Go to UniProtKB: A0A4D6NYT7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A4D6NYT7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.66 Å
R-Value Free: 0.412 (Depositor), 0.410 (DCC)
R-Value Work: 0.378 (Depositor), 0.380 (DCC)
R-Value Observed: 0.378 (Depositor)

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.09	α = 90
b = 83.09	β = 90
c = 302.931	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-07-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-07-14
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.