7CIU | pdb_00007ciu

Crystal Structure of Agmatine N-Acetyltransferase mutant S171A apo form

• PDB DOI: https://doi.org/10.2210/pdb7CIU/pdb

• Classification: TRANSFERASE
• Organism(s): Drosophila melanogaster
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-07-08 Released: 2021-07-21 
• Deposition Author(s): Chen, J.J., Hu, I.C., Lai, C.H., Lyu, P.C.
• Funding Organization(s): Ministry of Science and Technology (MoST, Taiwan)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.82 Å
• R-Value Free: 
  0.270 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.212 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.215 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Agmatine N-Acetyltransferase mutant S171A

Chen, J.J., Hu, I.C., Lai, C.H., Lyu, P.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 47.57 kDa 
• Atom Count: 3,495 
• Modeled Residue Count: 415 
• Deposited Residue Count: 432 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Agmatine N-acetyltransferase	A, B	216	Drosophila melanogaster	Mutation(s): 1  Gene Names: AgmNAT, AANATL8, Dmel\CG15766, CG15766, Dmel_CG15766 EC: 2.3.1.5 (PDB Primary Data), 2.3.1.87 (UniProt)
UniProt
Find proteins for Q9W469 (Drosophila melanogaster) Explore Q9W469  Go to UniProtKB:  Q9W469

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.82 Å
• R-Value Free:  0.270 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.212 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.215 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.201	α = 90
b = 59.905	β = 93.24
c = 64.85	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
HKL-2000	data scaling
MOLREP	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-07-21 
Deposition Author(s): Chen, J.J., Hu, I.C., Lai, C.H., Lyu, P.C.

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Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, Taiwan)	Taiwan	--

Revision History  

• Version 1.0: 2021-07-21
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Refinement description