7CG2 | pdb_00007cg2

Vigna radiata Epoxide hydrolase mutant

PDB DOI: https://doi.org/10.2210/pdb7CG2/pdb

Classification: HYDROLASE
Organism(s): Vigna radiata
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2020-06-30 Released: 2021-07-07
Deposition Author(s): Li, F.L., Yu, H.L., Xu, J.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.267 (Depositor), 0.273 (DCC)
R-Value Work:
0.220 (Depositor), 0.227 (DCC)
R-Value Observed:
0.222 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Reprogramming Epoxide Hydrolase to Improve Enantioconvergence in Hydrolysis of Styrene Oxide Scaffolds

Li, F.L., Qiu, Y.Y., Zheng, Y.C., Chen, F.F., Kong, X.D., Xu, J.H., Yu, H.L.

(2021) Adv Synth Catal 362: 4699-4706

DOI: https://doi.org/10.1002/adsc.202000898

Macromolecule Content

Total Structure Weight: 37.49 kDa
Atom Count: 2,821
Modeled Residue Count: 318
Deposited Residue Count: 328
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Epoxide hydrolase	A [auth B]	328	Vigna radiata	Mutation(s): 1 Gene Names: EH2 EC: 3.3.2.10
UniProt
Find proteins for A0A0R5NGA4 (Vigna radiata) Explore A0A0R5NGA4 Go to UniProtKB: A0A0R5NGA4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0R5NGA4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.267 (Depositor), 0.273 (DCC)
R-Value Work: 0.220 (Depositor), 0.227 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.478	α = 90
b = 70.478	β = 90
c = 129.487	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-07-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-07-07
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.