7CD6

mAPE1-recessed dsDNA product complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.182 

wwPDB Validation   3D Report Full Report



Literature

APE1 distinguishes DNA substrates in exonucleolytic cleavage by induced space-filling

Liu, T.C.Hsiao, Y.Y.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-(apurinic or apyrimidinic site) endonucleaseA308Mus musculusMutation(s): 0 
Gene Names: Apex1ApeApexRef1
EC: 3.1
Find proteins for P28352 (Mus musculus)
Explore P28352 
Go to UniProtKB:  P28352
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*AP*C)-3')B9synthetic construct
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.70 Å
    • R-Value Free: 0.220 
    • R-Value Work: 0.178 
    • R-Value Observed: 0.182 
    • Space Group: P 63 2 2
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 124.65α = 90
    b = 124.65β = 90
    c = 138.467γ = 120
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    HKL-2000data scaling
    PDB_EXTRACTdata extraction
    HKL-2000data reduction
    BALBESphasing

    Structure Validation

    View Full Validation Report



    Entry History & Funding Information

    Deposition Data

    • Deposited Date: 2020-06-18 
    • Released Date: 2021-01-13 
    • Deposition Author(s): Liu, T.C., Hsiao, Y.Y.

    Funding OrganizationLocationGrant Number
    Ministry of Science and Technology (MoST, Taiwan)TaiwanMOST 109-2636-B-009-004

    Revision History 

    • Version 1.0: 2021-01-13
      Type: Initial release