7C78 | pdb_00007c78

The crystal structure of type I-F anti-crispr protein AcrIF9

PDB DOI: https://doi.org/10.2210/pdb7C78/pdb

Classification: VIRAL PROTEIN
Organism(s): Photobacterium damselae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-05-24 Released: 2021-05-26
Deposition Author(s): Niu, Y., Feng, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free:
0.237 (Depositor), 0.250 (DCC)
R-Value Work:
0.210 (Depositor), 0.220 (DCC)
R-Value Observed:
0.211 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of type I-F anti-crispr protein AcrIF9

Niu, Y., Feng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 7.96 kDa
Atom Count: 604
Modeled Residue Count: 69
Deposited Residue Count: 70
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AcrIF9	A	70	Photobacterium damselae	Mutation(s): 0 Gene Names: BST98_20680
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free: 0.237 (Depositor), 0.250 (DCC)
R-Value Work: 0.210 (Depositor), 0.220 (DCC)
R-Value Observed: 0.211 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.899	α = 90
b = 57.806	β = 90
c = 27.299	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
AutoSol	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-05-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31822012

Revision History (Full details and data files)

Version 1.0: 2021-05-26
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.