7C3V | pdb_00007c3v

Structure of a thermostable Alcohol dehydrogenase from Kluyveromyces polyspora(KpADH)

• PDB DOI: https://doi.org/10.2210/pdb7C3V/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Kluyveromyces sp. CCTCC M2011385
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2020-05-14 Released: 2021-05-19 
• Deposition Author(s): Dai, W., Ni, Y., Xu, G., Liu, Y., Wang, Y., Zhou, J.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.231 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.186 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.189 (Depositor) 

Starting Model: experimental

Literature

Structure of a thermostable Alcohol dehydrogenase from Kluyveromyces polyspora(KpADH)

Dai, W., Ni, Y., Xu, G., Liu, Y., Wang, Y., Zhou, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 39.65 kDa 
• Atom Count: 2,969 
• Modeled Residue Count: 342 
• Deposited Residue Count: 342 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase	A	342	Kluyveromyces sp. CCTCC M2011385	Mutation(s): 0
UniProt
Find proteins for A0A1B0UHJ2 (Kluyveromyces sp. CCTCC M2011385) Explore A0A1B0UHJ2  Go to UniProtKB:  A0A1B0UHJ2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP	B [auth A]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.231 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.186 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.189 (Depositor) 

Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.867	α = 90
b = 102.867	β = 90
c = 65.908	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-05-19 
Deposition Author(s): Dai, W., Ni, Y., Xu, G., Liu, Y., Wang, Y., Zhou, J.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2021-05-19
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Refinement description