7C37 | pdb_00007c37

Crystal structure of AofleA from Arthrobotrys oligospora


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 
    0.161 (Depositor), 0.161 (DCC) 
  • R-Value Work: 
    0.121 (Depositor), 0.122 (DCC) 
  • R-Value Observed: 
    0.123 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 7C37

Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history

Literature

Structural insights into the fungi-nematodes interaction mediated by fucose-specific lectin AofleA from Arthrobotrys oligospora.

Liu, M.Cheng, X.Wang, J.Tian, D.Tang, K.Xu, T.Zhang, M.Wang, Y.Wang, M.

(2020) Int J Biol Macromol 164: 783-793

  • DOI: https://doi.org/10.1016/j.ijbiomac.2020.07.173
  • Primary Citation Related Structures: 
    7C37, 7C38, 7C39, 7C3C, 7C3D, 7C3E

  • PubMed Abstract: 

    Fungal lectin can bind specific carbohydrate structures of the host and work in recognition and adhesion or as a toxic factor. AofleA, as a fucose-specific lectin from widely studied nematode predatory fungus Arthrobotrys oligospora, possibly plays a key role in the event of capturing nematodes, but the mechanism remains unknown. Here we report the crystal structure of AofleA, which exists as a homodimer with each subunit folds as a six-bladed β-propeller. Our structural and biological results revealed that three of the six putative binding sites of AofleA had fucose-binding abilities. In addition, we found that AofleA could bind to the pharynx and intestine of the nematode in a fucose-binding-dependent manner. Our results facilitate the understanding of the mechanism that fucose-specific lectin mediates fungi-nematodes interaction, and provide structural information for the development of potential applications of AofleA.


  • Organizational Affiliation
    • School of Life Sciences, Anhui University, Hefei 230601, Anhui, China; Institutes of Physical Science and Information Technology, Anhui University, Hefei 230601, Anhui, China; Key Laboratory of Human Microenvironment and Precision Medicine of Anhui Higher Education Institutes, Anhui University, Hefei 230601, Anhui, China.

Macromolecule Content 

  • Total Structure Weight: 79.6 kDa 
  • Atom Count: 6,954 
  • Modeled Residue Count: 690 
  • Deposited Residue Count: 710 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
AofleA
A, B
355Orbilia oligospora ATCC 24927Mutation(s): 0 
Gene Names: AOL_s00076g540
UniProt
Find proteins for G1XA82 (Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491))
Explore G1XA82 
Go to UniProtKB:  G1XA82
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1XA82
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free:  0.161 (Depositor), 0.161 (DCC) 
  • R-Value Work:  0.121 (Depositor), 0.122 (DCC) 
  • R-Value Observed: 0.123 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.413α = 90
b = 78.949β = 90
c = 136.629γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31770066
Other governmentChinaKJ2019ZD02

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-29
    Type: Initial release
  • Version 1.1: 2020-08-05
    Changes: Database references
  • Version 1.2: 2020-08-12
    Changes: Database references
  • Version 1.3: 2020-09-23
    Changes: Structure summary
  • Version 1.4: 2023-11-29
    Changes: Data collection, Database references, Refinement description