7C2D | pdb_00007c2d

Esterase AlinE4 mutant-S13A

• PDB DOI: https://doi.org/10.2210/pdb7C2D/pdb
• Entry: 7C2D supersedes: 6M46

• Classification: HYDROLASE
• Organism(s): Altericroceibacterium indicum
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-05-07 Released: 2020-05-20 
• Deposition Author(s): Li, Z., Li, J.
• Funding Organization(s): Ministry of Science and Technology (MoST, China)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 
  0.205 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.171 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.172 (Depositor) 

Starting Model: experimental

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 7C85

Literature

C-terminal swapped dimers revealed a new catalytic mechanism of SGNH-hydrolase family esterases

Li, Z., Li, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 21.43 kDa 
• Atom Count: 1,660 
• Modeled Residue Count: 189 
• Deposited Residue Count: 191 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SGNH-hydrolase family esterase	A	191	Altericroceibacterium indicum	Mutation(s): 1
UniProt
Find proteins for A0A4P1LYH7 (Altericroceibacterium indicum) Explore A0A4P1LYH7  Go to UniProtKB:  A0A4P1LYH7

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CD	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N
ACT	H [auth A]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free:  0.205 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.171 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.172 (Depositor) 

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.81	α = 90
b = 79.81	β = 90
c = 60.82	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-05-20 
Deposition Author(s): Li, Z., Li, J.
• This entry supersedes: 6M46

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Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2016YFA0500600

Revision History  

• Version 1.0: 2020-05-20
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Derived calculations, Refinement description