7C10 | pdb_00007c10

Dithiol cGrx1

PDB DOI: https://doi.org/10.2210/pdb7C10/pdb

Classification: OXIDOREDUCTASE
Organism(s): Alkaliphilus oremlandii OhILAs
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2020-05-02 Released: 2020-11-18
Deposition Author(s): Lee, K., Hwang, K.Y.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free:
0.275 (Depositor), 0.283 (DCC)
R-Value Work:
0.219 (Depositor), 0.225 (DCC)
R-Value Observed:
0.225 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Monothiol and dithiol glutaredoxin-1 from clostridium oremlandii: identification of domain-swapped structures by NMR, X-ray crystallography and HDX mass spectrometry.

Lee, K., Yeo, K.J., Choi, S.H., Lee, E.H., Kim, B.K., Kim, S., Cheong, H.-K., Lee, W.-K., Kim, H.-Y., Hwang, E., Woo, J.R., Lee, S.-J., Hwang, K.Y.

(2020) IUCrJ 7: 1019-1027

DOI: https://doi.org/10.1107/S2052252520011598

Macromolecule Content

Total Structure Weight: 48.43 kDa
Atom Count: 2,918
Modeled Residue Count: 369
Deposited Residue Count: 420
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutaredoxin	A, B, C, D, E	84	Alkaliphilus oremlandii OhILAs	Mutation(s): 1 Gene Names: Clos_2129
UniProt
Find proteins for A8MIN3 (Alkaliphilus oremlandii (strain OhILAs)) Explore A8MIN3 Go to UniProtKB: A8MIN3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A8MIN3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free: 0.275 (Depositor), 0.283 (DCC)
R-Value Work: 0.219 (Depositor), 0.225 (DCC)
R-Value Observed: 0.225 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 93.42	α = 90
b = 61.105	β = 104.24
c = 93.94	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-11-18

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	2018R1A44A1022589
National Research Foundation (NRF, Korea)	Korea, Republic Of	2020R1A2C2005670

Revision History (Full details and data files)

Version 1.0: 2020-11-18
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.