7BXZ

Crystal structure of the aminoglycoside 6'-N-acetyltransferase from Enterococcus faecium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.228 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural analysis of a novel substrate-free form of the aminoglycoside 6'-N-acetyltransferase from Enterococcus faecium.

Jang, H.Kwon, S.Jeong, C.S.Lee, C.W.Hwang, J.Jung, K.H.Lee, J.H.Park, H.H.

(2020) Acta Crystallogr F Struct Biol Commun 76: 364-371

  • DOI: https://doi.org/10.1107/S2053230X20009735
  • Primary Citation of Related Structures:  
    7BXZ

  • PubMed Abstract: 

    Aminoglycoside acetyltransferases (AACs) catalyze the transfer of an acetyl group between acetyl-CoA and an aminoglycoside, producing CoA and an acetylated aminoglycoside. AAC(6')-Ii enzymes target the amino group linked to the 6' C atom in an aminoglycoside. Several structures of the AAC(6')-Ii from Enterococcus faecium [Ef-AAC(6')-Ii] have been reported to date. However, the detailed mechanism of its enzymatic function remains elusive. In this study, the crystal structure of Ef-AAC(6')-Ii was determined in a novel substrate-free form. Based on structural analysis, it is proposed that Ef-AAC(6')-Ii sequentially undergoes conformational selection and induced fit for substrate binding. These results therefore provide a novel viewpoint on the mechanism of action of Ef-AAC(6')-Ii.


  • Organizational Affiliation

    College of Pharmacy, Chung-Ang University, Dongjak-gu, Seoul 06974, Republic of Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aminoglycoside 6'-N-acetyltransferase
A, B, C
182Enterococcus faeciumMutation(s): 0 
Gene Names: aac(6')-Ii
UniProt
Find proteins for Q47764 (Enterococcus faecium)
Explore Q47764 
Go to UniProtKB:  Q47764
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ47764
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.228 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.426α = 90
b = 90.317β = 96.08
c = 102.151γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
SCALEPACKdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2017M3A9D8062960
National Research Foundation (NRF, Korea)Korea, Republic OfNRF-2018R1A4A1023822

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-12
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Advisory, Data collection, Database references, Refinement description