7BXY | pdb_00007bxy

mRNA interferase from Bacillus cereus

• PDB DOI: https://doi.org/10.2210/pdb7BXY/pdb

• Classification: HYDROLASE
• Organism(s): Bacillus cereus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-04-21 Released: 2021-04-28 
• Deposition Author(s): Kang, S.M.
• Funding Organization(s): National Research Foundation (NRF, Korea)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free: 
  0.225 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.189 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.193 (Depositor) 

Literature

mRNA interferase from Bacillus cereus

Kang, S.M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 12.99 kDa 
• Atom Count: 997 
• Modeled Residue Count: 116 
• Deposited Residue Count: 116 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
mRNA interferase	A	116	Bacillus cereus	Mutation(s): 0  Gene Names:  ndoA, A6E21_26500, A9485_14350, ACS95_12765, AT267_05875, AT272_01830, AT274_27885, AWW71_24810, B1995_17895, B2J90_01430, B4077_0233, B4079_4082, B4082_4620, B4088_0025, BACERE00183_00384, BACERE00184_01021, BACERE00185_00762, BACERE00191_00063, BC05F1_00266, BC067498_00234, BC141101_05148, BC2903_38150, BcrFT9_00246, BCRIVMBC845_00478, BG03_4879, BHL25_17845, BHL27_05940, BHL35_14900, BJR07_22055, BKK44_23145, BLX06_29915, C6Y54_07400, CEW46_16915, CJ306_01400, CN284_23940, CN290_26025, CN307_30430, CN415_21275, CN431_00035, CN490_24970, CN909_30810, CN950_27630, CN980_28290, CNQ78_21155, COC58_26245, COD14_00505, COD18_21020, COD86_27525, COD94_16985, COE18_25465, COI98_15170, COJ27_20485, COJ45_22815, CON05_27270, CON22_19380, CQZ91_26535, CV717_25730, CW365_02650, DR116_0030920, E0M29_20970, EDC93_113101, F2Y18_23305, FC691_26725, FC692_09555, FC695_10780, FHG65_28905, SAMN04487767_13815, SAMN05878494_5153, TU62_23120, TU68_19155, WR52_01230 EC: 3.1
UniProt
Find proteins for Q81IT4 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q81IT4  Go to UniProtKB:  Q81IT4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free:  0.225 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.189 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.193 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.648	α = 90
b = 60.648	β = 90
c = 76.247	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-04-28 
Deposition Author(s): Kang, S.M.

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Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)		--

Revision History  

• Version 1.0: 2021-04-28
  Type: Initial release
  
• Version 1.1: 2024-03-27
  Changes: Data collection, Database references