7BWG | pdb_00007bwg

A Glycoside Hydrolase Family 20 beta-N-Acetylglucosaminidase

PDB DOI: https://doi.org/10.2210/pdb7BWG/pdb

Classification: HYDROLASE
Organism(s): Microbacterium sp. HJ5
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-04-14 Released: 2020-04-29
Deposition Author(s): Zhang, R., Zhou, J.P., Huang, Z.X.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free:
0.335 (Depositor), 0.343 (DCC)
R-Value Work:
0.292 (Depositor)
R-Value Observed:
0.294 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

A Glycoside Hydrolase Family 20 beta-Acetylglucosaminidase

Zhang, R., Zhou, J.P., Huang, Z.X.

To be published.

Macromolecule Content

Total Structure Weight: 111.92 kDa
Atom Count: 6,618
Modeled Residue Count: 958
Deposited Residue Count: 1,064
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-N-acetylhexosaminidase	A, B	532	Microbacterium sp. HJ5	Mutation(s): 0 EC: 3.2.1.52
UniProt
Find proteins for A0A1W6AQA7 (Microbacterium sp. HJ5) Explore A0A1W6AQA7 Go to UniProtKB: A0A1W6AQA7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1W6AQA7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free: 0.335 (Depositor), 0.343 (DCC)
R-Value Work: 0.292 (Depositor)
R-Value Observed: 0.294 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.035	α = 90
b = 81.928	β = 94.076
c = 79.418	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DENZO	data reduction
HKL-2000	data scaling
Blu-Ice	data collection
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-04-29

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31460694

Revision History (Full details and data files)

Version 1.0: 2020-04-29
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.