7BWD

Structure of Dot1L-H2BK34ub Nucleosome Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the Dot1L-H2BK34ub Nucleosome Complex Reveals an Unprecedented Crosstalk Activation Mechanism through Nucleosome Shape Distortion

Liu, L.Lou, Z.Y.Ai, H.S.Cao, L.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Histone-lysine N-methyltransferase, H3 lysine-79 specificA [auth K]416Homo sapiensMutation(s): 0 
Gene Names: DOT1LKIAA1814KMT4
EC: 2.1.1.360
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H4I [auth B],
B [auth F]
102Homo sapiensMutation(s): 0 
Gene Names: 
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2A type 1-B/EH [auth C],
C [auth G]
129Homo sapiensMutation(s): 0 
Gene Names: H2AC4H2AFMHIST1H2ABH2AC8H2AFAHIST1H2AE
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2B type 1-KG [auth D],
D [auth H]
125Homo sapiensMutation(s): 0 
Gene Names: H2BC12H2BFTHIRIP1HIST1H2BK
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H3.1F [auth A],
E
135Homo sapiensMutation(s): 0 
Gene Names: 
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
UbiquitinL, M76Homo sapiensMutation(s): 1 
Gene Names: RPS27AUBA80UBCEP1
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Entity ID: 6
MoleculeChainsLengthOrganismImage
DNA (146-MER)J [auth I]146Homo sapiens
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Entity ID: 7
MoleculeChainsLengthOrganismImage
DNA (146-MER)K [auth J]146Homo sapiens
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Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download Ideal Coordinates CCD File 
N [auth K]S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2017YFA0505200
National Natural Science Foundation of China (NSFC)China21532004
National Natural Science Foundation of China (NSFC)China91753205
National Natural Science Foundation of China (NSFC)China81621002

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-14
    Type: Initial release