7BRL
Atrial Natriuretic Peptide Receptor complexed with Deletion mutant of rat Atrial Natriuretic Peptide[4-17,23]
- PDB DOI: https://doi.org/10.2210/pdb7BRL/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Rattus norvegicus
- Expression System: Rattus norvegicus
- Mutation(s): No 
- Deposited: 2020-03-29 Released: 2021-03-31 
- Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Japan Agency for Medical Research and Development (AMED)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.237 
- R-Value Work: 0.198 
- R-Value Observed: 0.200 
wwPDB Validation   3D Report Full Report
This is version 1.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Atrial natriuretic peptide receptor 1 | 435 | Rattus norvegicus | Mutation(s): 0  Gene Names: Npr1 EC: 4.6.1.2 | ||
UniProt | |||||
Find proteins for P18910 (Rattus norvegicus) Explore P18910  Go to UniProtKB:  P18910 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P18910 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Natriuretic peptides A | C [auth L] | 15 | Rattus norvegicus | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P01161 (Rattus norvegicus) Explore P01161  Go to UniProtKB:  P01161 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01161 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D [auth C], F [auth E] | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G62182OO GlyCosmos:  G62182OO GlyGen:  G62182OO |
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E [auth D], G [auth F] | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G48068RF GlyCosmos:  G48068RF GlyGen:  G48068RF |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CL (Subject of Investigation/LOI) Query on CL | H [auth A], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.237 
- R-Value Work: 0.198 
- R-Value Observed: 0.200 
- Space Group: P 61
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 100.273 | α = 90 |
b = 100.273 | β = 90 |
c = 270.415 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-03-31  Deposition Author(s): Ogawa, H.
Funding Organization | Location | Grant Number |
---|---|---|
Japan Society for the Promotion of Science (JSPS) | Japan | JP22570110 |
Japan Agency for Medical Research and Development (AMED) | Japan | JP17am0101080, JP18am0101080 and JP19am0101080 |
Revision History (Full details and data files)
- Version 1.0: 2021-03-31
Type: Initial release - Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description