Structural insight into hormone-recognition and transmembrane signaling by the atrial natriuretic peptide receptor
Ogawa, H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Atrial natriuretic peptide receptor 1 | 435 | Rattus norvegicus | Mutation(s): 0  Gene Names: Npr1 EC: 4.6.1.2 | ||
UniProt | |||||
Find proteins for P18910 (Rattus norvegicus) Explore P18910  Go to UniProtKB:  P18910 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P18910 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: P18910-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Natriuretic peptides A | C [auth L] | 28 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01160 (Homo sapiens) Explore P01160  Go to UniProtKB:  P01160 | |||||
PHAROS:  P01160 GTEx:  ENSG00000175206  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01160 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D [auth C], F [auth E] | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G62182OO GlyCosmos:  G62182OO GlyGen:  G62182OO |
Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E [auth D], G [auth F] | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G48068RF GlyCosmos:  G48068RF GlyGen:  G48068RF |
Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CL (Subject of Investigation/LOI) Query on CL | H [auth A], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 100.209 | α = 90 |
b = 100.209 | β = 90 |
c = 261.721 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Society for the Promotion of Science (JSPS) | Japan | JP22570110 |
Japan Agency for Medical Research and Development (AMED) | Japan | JP17am0101080, JP18am0101080 and JP19am0101080 |