7BPG

Structure of serinol nucleic acid - RNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.234 

wwPDB Validation   3D Report Full Report



Literature

Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA

Kamiya, Y.Satoh, T.Kodama, A.Suzuki, T.Murayama, K.Kashida, H.Uchiyama, S.Kato, K.Asanuma, H.

(2020) Commun Chem 


Macromolecules
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3')A, C, E, G8synthetic construct
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 2
      MoleculeChainsLengthOrganismImage
      SNA (S-(F7R)(F7X)(F7O)(F7R)(F7X)(F7O)(F7R)(F7U)-R)B, D, F, H8synthetic construct
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      CA
      Query on CA

      Download Ideal Coordinates CCD File 
      B
      CALCIUM ION
      Ca
      BHPQYMZQTOCNFJ-UHFFFAOYSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 1.70 Å
      • R-Value Free: 0.271 
      • R-Value Work: 0.232 
      • R-Value Observed: 0.234 
      • Space Group: P 1 21 1
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 40.363α = 90
      b = 46.918β = 114.54
      c = 47.54γ = 90
      Software Package:
      Software NamePurpose
      REFMACrefinement
      XDSdata reduction
      Aimlessdata scaling
      AutoSolphasing

      Structure Validation

      View Full Validation Report



      Entry History & Funding Information

      Deposition Data


      Funding OrganizationLocationGrant Number
      Japan Agency for Medical Research and Development (AMED)Japan--

      Revision History 

      • Version 1.0: 2020-11-25
        Type: Initial release