7BPD

Crystal structural analysis of Swine dUTPase

PDB DOI: https://doi.org/10.2210/pdb7BPD/pdb

Classification: HYDROLASE
Organism(s): Sus scrofa
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-03-22 Released: 2021-03-24
Deposition Author(s): Liang, R., Peng, G.Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.04 Å
R-Value Free: 0.258
R-Value Work: 0.207
R-Value Observed: 0.210

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structural analysis of swine dUTPase

Liang, R., Peng, G.Q.

To be published.

Macromolecule Content

Total Structure Weight: 37.07 kDa
Atom Count: 2,273
Modelled Residue Count: 264
Deposited Residue Count: 338
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Deoxyuridine triphosphatase	A, B	169	Sus scrofa	Mutation(s): 0 Gene Names: DUT
UniProt
Find proteins for A0A480PG39 (Sus scrofa) Explore A0A480PG39 Go to UniProtKB: A0A480PG39
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A480PG39
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.04 Å
R-Value Free: 0.258
R-Value Work: 0.207
R-Value Observed: 0.210
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.175	α = 90
b = 54.535	β = 116.68
c = 52.107	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-03-24

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31722056

Revision History (Full details and data files)

Version 1.0: 2021-03-24
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.