7BLF

Crystal structure of ene-reductase OYE4 from Botryotinia fuckeliana (BfOYE4)

PDB DOI: https://doi.org/10.2210/pdb7BLF/pdb

Classification: OXIDOREDUCTASE
Organism(s): Botrytis cinerea B05.10
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-01-18 Released: 2022-07-13
Deposition Author(s): Robescu, M.S., Bergantino, E., Hall, M., Cendron, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.218
R-Value Work: 0.181
R-Value Observed: 0.183

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Asymmetric Proton Transfer Catalysis by Stereocomplementary Old Yellow Enzymes for C=C Bond Isomerization Reaction

Robescu, M.S., Cendron, L., Bacchin, A., Wagner, K., Reiter, T., Janicki, I., Merusic, K., Illek, M., Aleotti, M., Bergantino, E., Hall, M.

(2022) ACS Catal 12: 7396-7405

DOI: https://doi.org/10.1021/acscatal.2c01110

Macromolecule Content

Total Structure Weight: 100.2 kDa
Atom Count: 6,786
Modelled Residue Count: 810
Deposited Residue Count: 910
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxidored_FMN domain-containing protein	A, B	455	Botrytis cinerea B05.10	Mutation(s): 0 Gene Names: BCIN_13g05380
UniProt
Find proteins for A0A384K246 (Botryotinia fuckeliana (strain B05.10)) Explore A0A384K246 Go to UniProtKB: A0A384K246
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A384K246
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN (Subject of Investigation/LOI) Query on FMN Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B]	C [auth A], E [auth B]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
FMT Query on FMT Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B]	D [auth A], F [auth B]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.218
R-Value Work: 0.181
R-Value Observed: 0.183
Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.04	α = 90
b = 92.061	β = 90
c = 161.998	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2022-07-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-07-13
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.